PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
hsa-clu-407 15:92561282...92615131 bi-directional hg38
hsa-clu-408 15:93407031...93429099 bi-directional hg38
hsa-clu-409 15:96758398...96785409 bi-directional hg38
hsa-clu-293 15:98932023...98963491 uni-directional hg38
hsa-clu-295 15:99129738...99135974 uni-directional hg38
hsa-clu-410 15:99791082...99801055 uni-directional hg38
mmu-clu-193 15:100576005...100579983 uni-directional mm10
hsa-clu-296 15:101750753...101782061 uni-directional hg38
mmu-clu-87 15:102433552...102435093 uni-directional mm10
mmu-clu-194 15:103192340...103198809 uni-directional mm10
hsa-clu-298 16:2519273...2520118 uni-directional hg38
hsa-clu-299 16:3640724...3656697 uni-directional hg38
mmu-clu-88 16:17234113...17245989 uni-directional mm10
hsa-clu-300 16:23669434...23677362 uni-directional hg38
hsa-clu-301 16:25067315...25083577 uni-directional hg38
hsa-clu-302 16:31064196...31080791 uni-directional hg38
rno-clu-175 16:48474635...48479056 uni-directional rn6
hsa-clu-411 16:69323233...69330098 uni-directional hg38
hsa-clu-303 16:70157723...70162250 uni-directional hg38
rno-clu-176 17:11756591...11761269 uni-directional rn6
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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