PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
hsa-clu-218 1:6610717...6623577 uni-directional hg38
rno-clu-89 1:14132498...14148017 uni-directional rn6
rno-clu-90 1:14181674...14201257 uni-directional rn6
hsa-clu-323 1:24251857...24254666 uni-directional hg38
hsa-clu-324 1:27406161...27414884 uni-directional hg38
hsa-clu-325 1:37812000...37822497 uni-directional hg38
rno-clu-91 1:54183117...54212715 uni-directional rn6
rno-clu-93 1:54888793...54901174 uni-directional rn6
rno-clu-94 1:55197602...55205690 uni-directional rn6
rno-clu-1 1:55467003...55485042 uni-directional rn6
rno-clu-2 1:55707618...55724527 uni-directional rn6
rno-clu-3 1:56001058...56005142 uni-directional rn6
mmu-clu-97 1:57352076...57362611 uni-directional mm10
mmu-clu-98 1:91403084...91405992 uni-directional mm10
mmu-clu-1 1:91544212...91559101 uni-directional mm10
mmu-clu-99 1:92981689...92997036 uni-directional mm10
rno-clu-95 1:97767401...97781557 uni-directional rn6
rno-clu-96 1:107557396...107563130 uni-directional rn6
rno-clu-4 1:108279071...108283886 uni-directional rn6
rno-clu-97 1:108830213...108840576 uni-directional rn6
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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