PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
mmu-clu-177 13:50559261...50569969 uni-directional mm10
mmu-clu-178 13:50907436...50913196 uni-directional mm10
mmu-clu-75 13:52098569...52124108 uni-directional mm10
mmu-clu-77 13:53394318...53402946 uni-directional mm10
rno-clu-167 13:76021745...76034791 uni-directional rn6
rno-clu-66 13:76035744...76052912 uni-directional rn6
hsa-clu-395 13:96947174...96948254 bi-directional hg38
rno-clu-168 14:3726469...3728001 uni-directional rn6
mmu-clu-78 14:8369685...8379706 uni-directional mm10
mmu-clu-179 14:19626847...19652801 uni-directional mm10
mmu-clu-79 14:24082162...24132982 uni-directional mm10
mmu-clu-181 14:24336989...24369617 uni-directional mm10
mmu-clu-183 14:24409807...24429600 uni-directional mm10
mmu-clu-184 14:32503236...32512769 uni-directional mm10
rno-clu-169 14:41061885...41073545 uni-directional rn6
mmu-clu-185 14:44760309...44780099 uni-directional mm10
mmu-clu-81 14:44935498...44952718 uni-directional mm10
hsa-clu-396 14:70725576...70733324 uni-directional hg38
rno-clu-170 14:85763743...85772751 uni-directional rn6
hsa-clu-397 14:88130087...88180078 bi-directional hg38
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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