PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
hsa-clu-281 14:100929921...100949899 uni-directional hg38
rno-clu-171 15:199695...279657 uni-directional rn6
hsa-clu-282 15:20340665...20352895 uni-directional hg38
hsa-clu-283 15:24676346...24683103 uni-directional hg38
hsa-clu-399 15:42741187...42743461 uni-directional hg38
hsa-clu-400 15:51250257...51309110 bi-directional hg38
mmu-clu-186 15:59247157...59311086 bi-directional mm10
hsa-clu-403 15:62196496...62279040 bi-directional hg38
mmu-clu-187 15:73096330...73106531 uni-directional mm10
mmu-clu-188 15:74621107...74636166 uni-directional mm10
mmu-clu-84 15:74636364...74658350 uni-directional mm10
mmu-clu-189 15:78642995...78670613 uni-directional mm10
mmu-clu-85 15:78672025...78683241 uni-directional mm10
mmu-clu-86 15:79928132...79948096 uni-directional mm10
mmu-clu-190 15:83353725...83367246 uni-directional mm10
hsa-clu-405 15:84390451...84399575 uni-directional hg38
rno-clu-67 15:84765936...84768424 uni-directional rn6
mmu-clu-191 15:88956541...88982504 uni-directional mm10
hsa-clu-288 15:89188260...89201201 uni-directional hg38
hsa-clu-406 15:91287256...91295790 uni-directional hg38
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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