PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
hsa-clu-424 19:34808344...34854460 bi-directional hg38
hsa-clu-426 19:34887424...34909244 bi-directional hg38
mmu-clu-204 19:37256072...37263754 uni-directional mm10
rno-clu-185 19:41520839...41534388 uni-directional rn6
rno-clu-75 19:41935384...41937674 uni-directional rn6
rno-clu-76 19:49744968...49750598 uni-directional rn6
hsa-clu-316 19:58417405...58437178 bi-directional hg38
mmu-clu-100 2:37571238...37578311 uni-directional mm10
rno-clu-107 2:44870878...44890159 uni-directional rn6
mmu-clu-6 2:91265578...91278989 uni-directional mm10
mmu-clu-7 2:92541365...92610556 uni-directional mm10
hsa-clu-328 2:94760777...94779957 uni-directional hg38
rno-clu-108 2:105273767...105285665 uni-directional rn6
hsa-clu-223 2:110678544...110714169 uni-directional hg38
mmu-clu-9 2:119599809...119606464 uni-directional mm10
rno-clu-14 2:121390075...121395810 uni-directional rn6
mmu-clu-10 2:127691911...127703552 uni-directional mm10
hsa-clu-329 2:127844213...127863657 uni-directional hg38
hsa-clu-330 2:131044696...131050342 uni-directional hg38
hsa-clu-225 2:131402975...131408172 uni-directional hg38
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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