PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
rno-clu-177 17:11785768...11794290 uni-directional rn6
rno-clu-178 17:11818524...11838494 uni-directional rn6
rno-clu-179 17:13119618...13143115 uni-directional rn6
rno-clu-68 17:14335254...14336932 uni-directional rn6
rno-clu-69 17:14401463...14404617 uni-directional rn6
rno-clu-70 17:14983128...15006048 uni-directional rn6
rno-clu-71 17:15210325...15256486 uni-directional rn6
rno-clu-181 17:15257250...15271754 uni-directional rn6
hsa-clu-412 17:18382566...18402136 uni-directional hg38
hsa-clu-304 17:20540866...20558445 uni-directional hg38
hsa-clu-305 17:20979108...20998682 uni-directional hg38
hsa-clu-413 17:20999837...21002840 uni-directional hg38
hsa-clu-306 17:22410485...22413270 uni-directional hg38
mmu-clu-89 17:22514269...22518322 uni-directional mm10
mmu-clu-195 17:27272326...27367267 bi-directional mm10
hsa-clu-414 17:28263085...28276743 uni-directional hg38
hsa-clu-415 17:35906935...35924691 uni-directional hg38
hsa-clu-307 17:38400089...38403650 uni-directional hg38
mmu-clu-92 17:39842998...39848201 uni-directional mm10
hsa-clu-308 17:40833163...40834869 uni-directional hg38
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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