PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
rno-clu-86 X:100582066...100587255 uni-directional rn6
rno-clu-87 X:107054195...107054260 uni-directional rn6
rno-clu-192 X:151252838...151287819 uni-directional rn6
rno-clu-88 X:155330302...155344262 uni-directional rn6
dme-clu-54 Y:988731...990125 uni-directional dm6
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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