PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
rno-clu-182 17:42159986...42161056 uni-directional rn6
hsa-clu-416 17:47049151...47056380 uni-directional hg38
mmu-clu-197 17:49112292...49113419 uni-directional mm10
hsa-clu-417 17:50366728...50385829 bi-directional hg38
mmu-clu-198 17:66158203...66233604 bi-directional mm10
hsa-clu-310 17:68126638...68133019 uni-directional hg38
hsa-clu-418 17:78991985...78997875 uni-directional hg38
mmu-clu-200 17:79335015...79335702 uni-directional mm10
hsa-clu-419 18:6925644...6928972 uni-directional hg38
hsa-clu-420 18:11643875...11685838 bi-directional hg38
rno-clu-183 18:25369584...25371628 uni-directional rn6
rno-clu-184 18:62772963...62773002 uni-directional rn6
mmu-clu-201 18:67027653...67091769 bi-directional mm10
hsa-clu-421 19:1272182...1274918 uni-directional hg38
mmu-clu-202 19:4777289...4790869 uni-directional mm10
hsa-clu-422 19:12700844...12715502 uni-directional hg38
hsa-clu-313 19:16015313...16040971 uni-directional hg38
rno-clu-74 19:16236248...16253314 uni-directional rn6
hsa-clu-423 19:19739427...19758446 uni-directional hg38
mmu-clu-203 19:31912260...31929513 uni-directional mm10
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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