PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
rno-clu-165 12:49058818...49092468 bi-directional rn6
rno-clu-64 12:49307282...49325935 uni-directional rn6
hsa-clu-275 12:54008942...54028456 bi-directional hg38
hsa-clu-386 12:54232102...54241769 uni-directional hg38
hsa-clu-387 12:57931565...57936044 uni-directional hg38
mmu-clu-173 12:98381903...98454989 bi-directional mm10
hsa-clu-388 12:100156442...100173447 uni-directional hg38
hsa-clu-389 12:120709258...120723502 bi-directional hg38
hsa-clu-390 12:121085474...121105201 bi-directional hg38
mmu-clu-175 13:21503731...21504987 uni-directional mm10
hsa-clu-391 13:23946622...23953719 uni-directional hg38
hsa-clu-278 13:24751913...24753424 uni-directional hg38
mmu-clu-71 13:24905672...24907153 uni-directional mm10
hsa-clu-392 13:31309816...31321986 uni-directional hg38
hsa-clu-393 13:31340855...31374811 uni-directional hg38
rno-clu-65 13:41504515...41507360 uni-directional rn6
mmu-clu-72 13:41635005...41640481 uni-directional mm10
mmu-clu-73 13:49889127...49892648 uni-directional mm10
mmu-clu-74 13:50292710...50309518 uni-directional mm10
mmu-clu-176 13:50506427...50518421 uni-directional mm10
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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