PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
hsa-clu-379 11:78216202...78226970 uni-directional hg38
mmu-clu-170 11:82874083...82883962 uni-directional mm10
rno-clu-157 11:84231571...84240821 uni-directional rn6
rno-clu-158 11:87085795...87133726 bi-directional rn6
mmu-clu-63 11:95764779...95770776 uni-directional mm10
mmu-clu-171 11:100458950...100463785 uni-directional mm10
mmu-clu-64 11:103424155...103449779 uni-directional mm10
mmu-clu-66 11:106055710...106057628 uni-directional mm10
mmu-clu-67 11:107993695...107997826 uni-directional mm10
mmu-clu-172 11:108418135...108424735 uni-directional mm10
hsa-clu-380 11:111720795...111738033 bi-directional hg38
hsa-clu-270 11:119285446...119304319 uni-directional hg38
hsa-clu-381 12:3443253...3487537 bi-directional hg38
mmu-clu-68 12:4107038...4109937 uni-directional mm10
rno-clu-160 12:6503565...6543796 uni-directional rn6
hsa-clu-382 12:9317351...9369266 bi-directional hg38
rno-clu-162 12:12830314...12837663 uni-directional rn6
rno-clu-163 12:22778567...22796229 uni-directional rn6
rno-clu-164 12:30022223...30033734 uni-directional rn6
rno-clu-60 12:47515606...47551411 uni-directional rn6
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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