PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
mmu-clu-163 10:85738527...85747985 uni-directional mm10
mmu-clu-59 10:85748622...85767625 uni-directional mm10
mmu-clu-164 10:86566009...86601762 uni-directional mm10
mmu-clu-60 10:86602964...86622604 uni-directional mm10
rno-clu-56 10:89517275...89528192 uni-directional rn6
hsa-clu-264 10:89837700...89840798 uni-directional hg38
rno-clu-57 10:91514244...91543643 uni-directional rn6
mmu-clu-166 10:94674110...94677078 uni-directional mm10
rno-clu-156 10:96659537...96662296 uni-directional rn6
hsa-clu-373 10:103594482...103613131 uni-directional hg38
hsa-clu-374 10:124620233...124627259 uni-directional hg38
mmu-clu-61 10:127688232...127700688 uni-directional mm10
mmu-clu-167 11:5528855...5541503 uni-directional mm10
hsa-clu-375 11:45643018...45735273 bi-directional hg38
mmu-clu-168 11:50940950...50943561 uni-directional mm10
hsa-clu-266 11:65649366...65659017 uni-directional hg38
mmu-clu-169 11:72772292...72777808 uni-directional mm10
hsa-clu-378 11:74835799...74845137 bi-directional hg38
hsa-clu-268 11:75005805...75016051 uni-directional hg38
mmu-clu-62 11:75573953...75584706 uni-directional mm10
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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