PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
mmu-clu-157 10:18796506...18830318 uni-directional mm10
mmu-clu-159 10:20310685...20312255 uni-directional mm10
hsa-clu-368 10:28790050...28795915 uni-directional hg38
rno-clu-155 10:36441747...36444185 uni-directional rn6
mmu-clu-51 10:56504646...56507884 uni-directional mm10
mmu-clu-160 10:61428976...61433792 uni-directional mm10
mmu-clu-52 10:62652814...62689463 uni-directional mm10
mmu-clu-161 10:66672214...66698101 uni-directional mm10
mmu-clu-54 10:66698828...66706166 uni-directional mm10
hsa-clu-260 10:68737171...68755236 uni-directional hg38
hsa-clu-369 10:68863144...68880257 uni-directional hg38
hsa-clu-261 10:70421783...70428214 uni-directional hg38
mmu-clu-55 10:71366061...71383698 uni-directional mm10
mmu-clu-56 10:75837677...75862454 uni-directional mm10
mmu-clu-57 10:76040085...76041934 uni-directional mm10
hsa-clu-262 10:77763722...77802215 bi-directional hg38
hsa-clu-371 10:79684725...79702299 uni-directional hg38
hsa-clu-372 10:83561521...83564742 uni-directional hg38
rno-clu-55 10:83572558...83577729 uni-directional rn6
mmu-clu-58 10:84488363...84494936 uni-directional mm10
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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