PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
rno-clu-98 1:109517534...109522453 uni-directional rn6
hsa-clu-219 1:110057476...110060746 uni-directional hg38
hsa-clu-220 1:112516255...112526023 uni-directional hg38
mmu-clu-2 1:125174969...125177249 uni-directional mm10
mmu-clu-3 1:127482540...127488234 uni-directional mm10
rno-clu-99 1:130981958...131050386 bi-directional rn6
rno-clu-101 1:134408321...134431776 uni-directional rn6
rno-clu-7 1:134431931...134474329 uni-directional rn6
rno-clu-102 1:135136992...135227807 bi-directional rn6
hsa-clu-221 1:147276439...147293975 uni-directional hg38
mmu-clu-4 1:156641140...156647915 uni-directional mm10
mmu-clu-5 1:160969045...160972140 uni-directional mm10
hsa-clu-326 1:179582630...179590862 uni-directional hg38
rno-clu-104 1:196691918...196702337 uni-directional rn6
hsa-clu-222 1:209232338...209239405 uni-directional hg38
rno-clu-105 1:221201343...221204144 uni-directional rn6
hsa-clu-327 1:222473987...222475806 uni-directional hg38
rno-clu-13 1:224998540...225000025 uni-directional rn6
rno-clu-106 1:255891256...255901398 uni-directional rn6
rno-clu-54 10:15724755...15731561 uni-directional rn6
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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