PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-147 JH000545.1:13218...14731 uni-directional crigri1
cgr-clu-382 JH000545.1:15165...17038 uni-directional crigri1
cgr-clu-148 JH000545.1:381569...383053 bi-directional crigri1
cgr-clu-384 JH000556.1:222751...229402 uni-directional crigri1
cgr-clu-385 JH000558.1:1111073...1123508 uni-directional crigri1
cgr-clu-149 JH000578.1:134045...137986 uni-directional crigri1
cgr-clu-150 JH000604.1:668899...675948 uni-directional crigri1
cgr-clu-151 JH000613.1:324222...326462 uni-directional crigri1
cgr-clu-152 JH000614.1:641278...660520 uni-directional crigri1
cgr-clu-386 JH000615.1:693590...700859 uni-directional crigri1
cgr-clu-387 JH000616.1:339157...353449 bi-directional crigri1
cgr-clu-388 JH000616.1:596947...600224 uni-directional crigri1
cgr-clu-389 JH000621.1:952699...957248 uni-directional crigri1
cgr-clu-390 JH000629.1:98834...100881 uni-directional crigri1
cgr-clu-391 JH000631.1:260466...265924 uni-directional crigri1
cgr-clu-154 JH000631.1:450663...453299 uni-directional crigri1
cgr-clu-392 JH000637.1:239300...243329 bi-directional crigri1
cgr-clu-393 JH000637.1:313298...316467 uni-directional crigri1
cgr-clu-394 JH000650.1:652078...659845 uni-directional crigri1
cgr-clu-156 JH000652.1:588816...598821 bi-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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