PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-118 JH000379.1:122797...127855 uni-directional crigri1
cgr-clu-358 JH000381.1:178422...182887 uni-directional crigri1
cgr-clu-119 JH000381.1:182995...183188 uni-directional crigri1
cgr-clu-120 JH000381.1:1036824...1044823 uni-directional crigri1
cgr-clu-121 JH000383.1:129232...132756 uni-directional crigri1
cgr-clu-359 JH000396.1:622593...627411 bi-directional crigri1
cgr-clu-360 JH000399.1:1107785...1110218 uni-directional crigri1
cgr-clu-123 JH000402.1:28897...32532 uni-directional crigri1
cgr-clu-124 JH000402.1:714911...724662 uni-directional crigri1
cgr-clu-125 JH000403.1:386041...394644 uni-directional crigri1
cgr-clu-361 JH000410.1:1298995...1302357 bi-directional crigri1
cgr-clu-362 JH000414.1:544746...553690 uni-directional crigri1
cgr-clu-127 JH000420.1:173688...187507 uni-directional crigri1
cgr-clu-128 JH000425.1:1175422...1176305 uni-directional crigri1
cgr-clu-363 JH000425.1:1280335...1291251 bi-directional crigri1
cgr-clu-364 JH000426.1:1284031...1299668 bi-directional crigri1
cgr-clu-131 JH000433.1:1323103...1344996 bi-directional crigri1
cgr-clu-132 JH000436.1:120014...129411 uni-directional crigri1
cgr-clu-366 JH000436.1:411417...412940 uni-directional crigri1
cgr-clu-133 JH000450.1:997475...1005120 bi-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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