PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-134 JH000466.1:501934...512286 bi-directional crigri1
cgr-clu-135 JH000468.1:41484...46045 bi-directional crigri1
cgr-clu-136 JH000468.1:445775...451678 uni-directional crigri1
cgr-clu-137 JH000472.1:906210...921684 bi-directional crigri1
cgr-clu-371 JH000474.1:154254...160703 uni-directional crigri1
cgr-clu-138 JH000480.1:113079...129157 bi-directional crigri1
cgr-clu-139 JH000481.1:277533...291942 uni-directional crigri1
cgr-clu-373 JH000492.1:399626...412827 bi-directional crigri1
cgr-clu-141 JH000492.1:1120065...1124485 uni-directional crigri1
cgr-clu-374 JH000498.1:424443...425947 uni-directional crigri1
cgr-clu-142 JH000498.1:523674...530929 uni-directional crigri1
cgr-clu-375 JH000499.1:157084...157661 uni-directional crigri1
cgr-clu-376 JH000499.1:432754...434320 uni-directional crigri1
cgr-clu-377 JH000499.1:1087591...1088899 uni-directional crigri1
cgr-clu-143 JH000522.1:448685...459079 bi-directional crigri1
cgr-clu-379 JH000523.1:1097116...1103641 uni-directional crigri1
cgr-clu-144 JH000532.1:1067634...1079405 uni-directional crigri1
cgr-clu-380 JH000537.1:116066...126424 uni-directional crigri1
cgr-clu-145 JH000537.1:616462...619141 uni-directional crigri1
cgr-clu-381 JH000544.1:180061...184633 bi-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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