PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-410 JH000767.1:647818...659831 uni-directional crigri1
cgr-clu-165 JH000768.1:539026...546321 uni-directional crigri1
cgr-clu-166 JH000775.1:649667...651624 uni-directional crigri1
cgr-clu-411 JH000804.1:65139...67026 uni-directional crigri1
cgr-clu-412 JH000814.1:136653...138384 uni-directional crigri1
cgr-clu-167 JH000815.1:394232...398140 uni-directional crigri1
cgr-clu-168 JH000828.1:574785...578642 uni-directional crigri1
cgr-clu-169 JH000837.1:608760...621851 uni-directional crigri1
cgr-clu-170 JH000859.1:676418...678127 uni-directional crigri1
cgr-clu-171 JH000861.1:664957...670378 uni-directional crigri1
cgr-clu-172 JH000867.1:539942...541396 uni-directional crigri1
cgr-clu-413 JH000883.1:18495...20235 uni-directional crigri1
cgr-clu-173 JH000887.1:557404...574115 uni-directional crigri1
cgr-clu-174 JH000918.1:348285...353721 uni-directional crigri1
cgr-clu-414 JH000967.1:250992...253841 uni-directional crigri1
cgr-clu-175 JH000986.1:139092...149806 uni-directional crigri1
cgr-clu-176 JH000989.1:165541...168740 uni-directional crigri1
cgr-clu-415 JH000991.1:35297...38566 uni-directional crigri1
cgr-clu-177 JH000995.1:356116...358203 bi-directional crigri1
cgr-clu-417 JH000995.1:615508...617136 uni-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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