PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-347 JH000315.1:1610071...1616411 uni-directional crigri1
cgr-clu-107 JH000320.1:157531...168262 uni-directional crigri1
cgr-clu-348 JH000320.1:411500...414328 uni-directional crigri1
cgr-clu-108 JH000320.1:921114...922559 uni-directional crigri1
cgr-clu-109 JH000320.1:1118652...1120721 uni-directional crigri1
cgr-clu-110 JH000321.1:311444...315144 uni-directional crigri1
cgr-clu-349 JH000321.1:1196173...1199408 uni-directional crigri1
cgr-clu-350 JH000324.1:529927...535771 uni-directional crigri1
cgr-clu-111 JH000329.1:1454617...1457740 uni-directional crigri1
cgr-clu-351 JH000330.1:217758...225140 bi-directional crigri1
cgr-clu-352 JH000333.1:1588985...1593957 uni-directional crigri1
cgr-clu-353 JH000334.1:257079...264575 uni-directional crigri1
cgr-clu-354 JH000339.1:930762...934677 uni-directional crigri1
cgr-clu-355 JH000342.1:1430020...1438062 bi-directional crigri1
cgr-clu-356 JH000344.1:7078...13791 uni-directional crigri1
cgr-clu-114 JH000346.1:403870...411826 uni-directional crigri1
cgr-clu-115 JH000347.1:1461481...1467361 uni-directional crigri1
cgr-clu-116 JH000362.1:681227...688408 uni-directional crigri1
cgr-clu-357 JH000372.1:426138...430113 uni-directional crigri1
cgr-clu-117 JH000375.1:1466046...1473086 uni-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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