PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-418 JH001004.1:490409...497462 uni-directional crigri1
cgr-clu-178 JH001010.1:83844...86593 uni-directional crigri1
cgr-clu-419 JH001014.1:350599...355156 uni-directional crigri1
cgr-clu-179 JH001015.1:506901...511022 uni-directional crigri1
cgr-clu-420 JH001034.1:26993...32785 uni-directional crigri1
cgr-clu-421 JH001059.1:238583...242832 uni-directional crigri1
cgr-clu-422 JH001088.1:172790...175133 uni-directional crigri1
cgr-clu-423 JH001092.1:163714...167551 uni-directional crigri1
cgr-clu-180 JH001100.1:539668...550013 uni-directional crigri1
cgr-clu-181 JH001107.1:227948...229308 uni-directional crigri1
cgr-clu-182 JH001133.1:517331...518742 uni-directional crigri1
cgr-clu-424 JH001140.1:113363...122690 uni-directional crigri1
cgr-clu-183 JH001143.1:413322...416358 uni-directional crigri1
cgr-clu-425 JH001151.1:367397...376254 uni-directional crigri1
cgr-clu-184 JH001184.1:433244...434450 uni-directional crigri1
cgr-clu-426 JH001191.1:329570...335238 uni-directional crigri1
cgr-clu-427 JH001202.1:389709...397029 uni-directional crigri1
cgr-clu-428 JH001218.1:371594...375206 uni-directional crigri1
cgr-clu-185 JH001219.1:29429...30097 uni-directional crigri1
cgr-clu-186 JH001219.1:254610...258304 bi-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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