PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-330 JH000260.1:179997...193620 uni-directional crigri1
cgr-clu-331 JH000261.1:1253046...1254377 uni-directional crigri1
cgr-clu-332 JH000268.1:540630...554967 uni-directional crigri1
cgr-clu-333 JH000273.1:714654...715340 uni-directional crigri1
cgr-clu-334 JH000273.1:1396512...1400661 bi-directional crigri1
cgr-clu-98 JH000276.1:1343362...1371259 bi-directional crigri1
cgr-clu-337 JH000278.1:1692486...1720490 bi-directional crigri1
cgr-clu-101 JH000279.1:254757...273349 uni-directional crigri1
cgr-clu-102 JH000285.1:997387...1015386 bi-directional crigri1
cgr-clu-103 JH000286.1:532214...535714 uni-directional crigri1
cgr-clu-340 JH000286.1:1555316...1557648 uni-directional crigri1
cgr-clu-104 JH000290.1:1715625...1728108 uni-directional crigri1
cgr-clu-341 JH000296.1:1710430...1714390 uni-directional crigri1
cgr-clu-105 JH000297.1:571793...581133 uni-directional crigri1
cgr-clu-342 JH000299.1:558629...575394 uni-directional crigri1
cgr-clu-343 JH000301.1:203682...208454 uni-directional crigri1
cgr-clu-344 JH000310.1:742464...743639 uni-directional crigri1
cgr-clu-345 JH000313.1:93083...96720 uni-directional crigri1
cgr-clu-106 JH000314.1:1219613...1223014 uni-directional crigri1
cgr-clu-346 JH000315.1:806069...810169 uni-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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