PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-84 JH000219.1:1886994...1889841 uni-directional crigri1
cgr-clu-85 JH000220.1:1328347...1329432 uni-directional crigri1
cgr-clu-86 JH000222.1:1212636...1215660 uni-directional crigri1
cgr-clu-320 JH000222.1:1823720...1833778 uni-directional crigri1
cgr-clu-321 JH000226.1:701739...706800 bi-directional crigri1
cgr-clu-322 JH000228.1:1571980...1574133 bi-directional crigri1
cgr-clu-89 JH000231.1:670373...673364 uni-directional crigri1
cgr-clu-323 JH000232.1:17233...28437 bi-directional crigri1
cgr-clu-91 JH000234.1:1270965...1277643 uni-directional crigri1
cgr-clu-92 JH000236.1:1110465...1113507 uni-directional crigri1
cgr-clu-324 JH000243.1:352647...358644 uni-directional crigri1
cgr-clu-93 JH000243.1:1810882...1815379 uni-directional crigri1
cgr-clu-325 JH000245.1:1656174...1669078 uni-directional crigri1
cgr-clu-326 JH000248.1:1759416...1768327 uni-directional crigri1
cgr-clu-94 JH000251.1:1312746...1320178 uni-directional crigri1
cgr-clu-95 JH000251.1:1440294...1443540 uni-directional crigri1
cgr-clu-327 JH000252.1:23048...30141 uni-directional crigri1
cgr-clu-328 JH000252.1:321779...329449 uni-directional crigri1
cgr-clu-96 JH000254.1:1232249...1234091 uni-directional crigri1
cgr-clu-329 JH000259.1:1064922...1072132 uni-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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