PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-303 JH000154.1:725966...735236 uni-directional crigri1
cgr-clu-304 JH000155.1:1500809...1508392 uni-directional crigri1
cgr-clu-305 JH000162.1:541926...554724 uni-directional crigri1
cgr-clu-306 JH000165.1:885625...900356 uni-directional crigri1
cgr-clu-307 JH000166.1:986284...998210 uni-directional crigri1
cgr-clu-74 JH000170.1:1612817...1644880 bi-directional crigri1
cgr-clu-309 JH000173.1:455188...464602 uni-directional crigri1
cgr-clu-76 JH000173.1:1891977...1893477 uni-directional crigri1
cgr-clu-77 JH000177.1:1054453...1069530 bi-directional crigri1
cgr-clu-78 JH000189.1:243107...262709 bi-directional crigri1
cgr-clu-312 JH000191.1:503598...508797 uni-directional crigri1
cgr-clu-313 JH000196.1:1407598...1412130 uni-directional crigri1
cgr-clu-314 JH000198.1:486572...509402 bi-directional crigri1
cgr-clu-316 JH000200.1:1721055...1727688 uni-directional crigri1
cgr-clu-80 JH000209.1:1197901...1199991 uni-directional crigri1
cgr-clu-317 JH000209.1:1768419...1771996 bi-directional crigri1
cgr-clu-318 JH000217.1:48291...48332 uni-directional crigri1
cgr-clu-82 JH000217.1:1441833...1452989 uni-directional crigri1
cgr-clu-319 JH000217.1:1843519...1847144 uni-directional crigri1
cgr-clu-83 JH000219.1:1381170...1387844 uni-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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