PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-276 JH000088.1:2625134...2629745 uni-directional crigri1
cgr-clu-277 JH000090.1:1778109...1796282 uni-directional crigri1
cgr-clu-46 JH000090.1:2112906...2121661 uni-directional crigri1
cgr-clu-278 JH000092.1:1453632...1458249 uni-directional crigri1
cgr-clu-279 JH000098.1:309624...317031 uni-directional crigri1
cgr-clu-280 JH000098.1:2772015...2788434 bi-directional crigri1
cgr-clu-48 JH000100.1:1928947...1939864 bi-directional crigri1
cgr-clu-282 JH000101.1:1971096...1972925 uni-directional crigri1
cgr-clu-283 JH000104.1:238104...245576 uni-directional crigri1
cgr-clu-49 JH000104.1:614235...616089 uni-directional crigri1
cgr-clu-50 JH000106.1:1882346...1897289 bi-directional crigri1
cgr-clu-285 JH000107.1:855787...859464 uni-directional crigri1
cgr-clu-286 JH000108.1:997784...1002975 uni-directional crigri1
cgr-clu-51 JH000108.1:1316605...1319497 uni-directional crigri1
cgr-clu-287 JH000110.1:2161047...2171276 bi-directional crigri1
cgr-clu-288 JH000110.1:2194785...2201841 bi-directional crigri1
cgr-clu-289 JH000112.1:745393...765152 uni-directional crigri1
cgr-clu-54 JH000112.1:918479...927917 uni-directional crigri1
cgr-clu-290 JH000115.1:1004397...1011063 uni-directional crigri1
cgr-clu-55 JH000115.1:1294244...1297447 uni-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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