PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
hsa-clu-367 9:136440661...136459819 uni-directional hg38
cel-clu-247 IV:4813581...4909983 bi-directional ce11
cel-clu-6 IV:4915613...5055251 bi-directional ce11
cel-clu-257 IV:5072747...5230611 bi-directional ce11
cel-clu-265 IV:5265097...5294079 bi-directional ce11
cel-clu-22 IV:5316374...5353621 bi-directional ce11
cel-clu-24 IV:5376044...5388274 bi-directional ce11
cel-clu-270 IV:5400735...5450256 bi-directional ce11
cel-clu-273 IV:5479318...5532933 bi-directional ce11
cel-clu-276 IV:5559098...5648825 bi-directional ce11
cel-clu-36 IV:5668105...5682359 bi-directional ce11
cel-clu-282 IV:5705149...5988149 bi-directional ce11
cel-clu-52 IV:6008478...6094071 bi-directional ce11
cel-clu-301 IV:6111073...6208646 bi-directional ce11
cel-clu-62 IV:6244515...6302729 bi-directional ce11
cel-clu-65 IV:6379883...6520129 bi-directional ce11
cel-clu-315 IV:6542066...6577096 uni-directional ce11
cel-clu-317 IV:6620404...6640045 uni-directional ce11
cel-clu-72 IV:6641638...6658738 uni-directional ce11
cel-clu-318 IV:6800910...6854507 bi-directional ce11
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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