PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
hsa-clu-255 9:69067071...69076682 uni-directional hg38
hsa-clu-360 9:79850914...79900721 bi-directional hg38
hsa-clu-362 9:81914436...81918558 uni-directional hg38
hsa-clu-257 9:81976650...81995413 uni-directional hg38
hsa-clu-363 9:90580453...90601744 bi-directional hg38
hsa-clu-364 9:98084603...98087339 uni-directional hg38
mmu-clu-153 9:98274346...98286589 uni-directional mm10
rno-clu-150 9:98540441...98544072 uni-directional rn6
rno-clu-47 9:98672615...98689102 uni-directional rn6
rno-clu-151 9:100148580...100152511 uni-directional rn6
mmu-clu-50 9:108046062...108047538 uni-directional mm10
hsa-clu-259 9:113111711...113119631 uni-directional hg38
rno-clu-48 9:113969452...114014246 bi-directional rn6
rno-clu-153 9:114166797...114190725 bi-directional rn6
rno-clu-154 9:114337242...114341138 uni-directional rn6
mmu-clu-154 9:114341315...114355728 uni-directional mm10
rno-clu-52 9:114341830...114368001 uni-directional rn6
mmu-clu-155 9:122777422...122805277 uni-directional mm10
hsa-clu-365 9:123112417...123118839 uni-directional hg38
hsa-clu-366 9:129634956...129640618 uni-directional hg38
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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