PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cel-clu-320 IV:6928871...6941937 uni-directional ce11
cel-clu-75 IV:6953874...6971886 uni-directional ce11
cel-clu-76 IV:6983808...7008779 bi-directional ce11
cel-clu-77 IV:9116905...9132972 uni-directional ce11
cel-clu-322 IV:13543927...13563736 uni-directional ce11
cel-clu-323 IV:13588462...13772705 bi-directional ce11
cel-clu-88 IV:13796983...14056186 bi-directional ce11
cel-clu-102 IV:14085611...14761650 bi-directional ce11
cel-clu-137 IV:14800729...15005535 bi-directional ce11
cel-clu-392 IV:15051363...15442291 bi-directional ce11
cel-clu-169 IV:15465695...15510323 bi-directional ce11
cel-clu-415 IV:15530867...15631905 bi-directional ce11
cel-clu-177 IV:15648666...16288105 bi-directional ce11
cel-clu-454 IV:16341706...16396608 bi-directional ce11
cel-clu-214 IV:16433318...16480221 bi-directional ce11
cel-clu-460 IV:16505726...16751672 bi-directional ce11
cel-clu-473 IV:16771443...16840267 bi-directional ce11
cel-clu-477 IV:16869802...16924387 bi-directional ce11
cel-clu-236 IV:16969741...16994789 bi-directional ce11
cel-clu-481 IV:17015138...17074923 bi-directional ce11
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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