PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cel-clu-484 IV:17129634...17264818 bi-directional ce11
cgr-clu-226 JH000003.1:3701517...3705706 uni-directional crigri1
cgr-clu-227 JH000003.1:6290962...6300570 uni-directional crigri1
cgr-clu-228 JH000004.1:3599925...3606626 uni-directional crigri1
cgr-clu-1 JH000004.1:5752583...5755939 uni-directional crigri1
cgr-clu-2 JH000005.1:2043724...2048291 uni-directional crigri1
cgr-clu-229 JH000006.1:1351777...1368779 uni-directional crigri1
cgr-clu-230 JH000006.1:4950412...4952647 uni-directional crigri1
cgr-clu-3 JH000007.1:236914...237266 uni-directional crigri1
cgr-clu-231 JH000007.1:1059359...1064951 uni-directional crigri1
cgr-clu-232 JH000008.1:200084...216732 uni-directional crigri1
cgr-clu-4 JH000008.1:1454167...1459781 uni-directional crigri1
cgr-clu-5 JH000010.1:1237012...1256739 bi-directional crigri1
cgr-clu-234 JH000011.1:3263485...3282590 bi-directional crigri1
cgr-clu-7 JH000012.1:1926570...1937327 uni-directional crigri1
cgr-clu-8 JH000015.1:2201557...2205606 uni-directional crigri1
cgr-clu-9 JH000016.1:758638...763106 uni-directional crigri1
cgr-clu-235 JH000017.1:1218102...1225324 uni-directional crigri1
cgr-clu-10 JH000018.1:1450154...1450225 uni-directional crigri1
cgr-clu-11 JH000018.1:4244139...4249844 bi-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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