PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-12 JH000019.1:1108139...1116340 bi-directional crigri1
cgr-clu-13 JH000019.1:2048781...2051812 uni-directional crigri1
cgr-clu-14 JH000022.1:2119443...2134991 uni-directional crigri1
cgr-clu-238 JH000026.1:1987614...1990928 uni-directional crigri1
cgr-clu-15 JH000026.1:2948341...2949486 uni-directional crigri1
cgr-clu-239 JH000031.1:268382...271367 uni-directional crigri1
cgr-clu-16 JH000031.1:290826...292480 uni-directional crigri1
cgr-clu-240 JH000031.1:3262650...3268871 uni-directional crigri1
cgr-clu-241 JH000031.1:3510037...3512983 bi-directional crigri1
cgr-clu-242 JH000031.1:3781836...3784192 uni-directional crigri1
cgr-clu-18 JH000032.1:290879...301772 bi-directional crigri1
cgr-clu-244 JH000035.1:3000920...3008956 uni-directional crigri1
cgr-clu-245 JH000038.1:369343...400226 uni-directional crigri1
cgr-clu-247 JH000038.1:1235229...1239447 uni-directional crigri1
cgr-clu-19 JH000038.1:3222948...3241892 uni-directional crigri1
cgr-clu-248 JH000039.1:624015...626911 uni-directional crigri1
cgr-clu-20 JH000039.1:857555...862587 uni-directional crigri1
cgr-clu-249 JH000039.1:3353991...3357182 uni-directional crigri1
cgr-clu-250 JH000040.1:1940385...1953450 uni-directional crigri1
cgr-clu-251 JH000041.1:1176913...1193638 uni-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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