PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
mmu-clu-144 8:93410861...93423307 uni-directional mm10
mmu-clu-43 8:107012643...107018453 uni-directional mm10
mmu-clu-44 8:110118174...110130825 uni-directional mm10
mmu-clu-145 8:111003593...111020673 uni-directional mm10
mmu-clu-45 8:117207365...117214912 uni-directional mm10
rno-clu-45 8:118803372...118815737 uni-directional rn6
mmu-clu-146 8:124893207...124908824 uni-directional mm10
hsa-clu-355 8:124901517...124958047 bi-directional hg38
hsa-clu-357 8:144516042...144521872 uni-directional hg38
mmu-clu-147 9:3183251...3188284 uni-directional mm10
rno-clu-149 9:12693087...12695784 uni-directional rn6
rno-clu-46 9:13830560...13831662 uni-directional rn6
hsa-clu-358 9:26624598...26643940 uni-directional hg38
hsa-clu-254 9:37502559...37515669 uni-directional hg38
hsa-clu-359 9:37885740...37886776 uni-directional hg38
mmu-clu-148 9:44145018...44151361 uni-directional mm10
mmu-clu-46 9:51848750...51852334 uni-directional mm10
mmu-clu-149 9:54205727...54249599 uni-directional mm10
mmu-clu-47 9:54250064...54266856 uni-directional mm10
mmu-clu-151 9:67684694...67771329 bi-directional mm10
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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