PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
rno-clu-142 7:124201914...124214567 uni-directional rn6
mmu-clu-138 7:125324953...125349704 uni-directional mm10
mmu-clu-39 7:125350315...125364220 uni-directional mm10
mmu-clu-40 7:127022138...127025389 bi-directional mm10
rno-clu-143 7:144813315...144826223 uni-directional rn6
hsa-clu-353 8:471553...491523 uni-directional hg38
hsa-clu-249 8:23480008...23482832 uni-directional hg38
mmu-clu-141 8:25156132...25169234 uni-directional mm10
mmu-clu-142 8:27294996...27296352 uni-directional mm10
hsa-clu-250 8:29051555...29063199 uni-directional hg38
mmu-clu-143 8:37093698...37105065 uni-directional mm10
rno-clu-144 8:39755527...39760632 uni-directional rn6
hsa-clu-354 8:42704030...42716839 uni-directional hg38
hsa-clu-251 8:43126346...43130595 uni-directional hg38
hsa-clu-252 8:46131743...46151127 uni-directional hg38
rno-clu-145 8:48482475...48486934 uni-directional rn6
rno-clu-146 8:58784252...58836787 bi-directional rn6
mmu-clu-41 8:66512750...66519062 uni-directional mm10
rno-clu-147 8:73534002...73591520 bi-directional rn6
mmu-clu-42 8:92189538...92201817 uni-directional mm10
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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