PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
hsa-clu-343 6:33860992...33926955 bi-directional hg38
hsa-clu-344 6:39103391...39113668 uni-directional hg38
hsa-clu-247 6:40378358...40379865 uni-directional hg38
hsa-clu-345 6:42720988...42727784 uni-directional hg38
hsa-clu-346 6:52497958...52503263 uni-directional hg38
mmu-clu-122 6:81894212...81910512 uni-directional mm10
mmu-clu-123 6:83769302...83771235 uni-directional mm10
mmu-clu-124 6:85111469...85126022 uni-directional mm10
mmu-clu-125 6:85987121...86003553 uni-directional mm10
mmu-clu-126 6:87945372...87993918 uni-directional mm10
mmu-clu-23 6:88808056...88828050 uni-directional mm10
mmu-clu-24 6:92167770...92171440 uni-directional mm10
rno-clu-133 6:94180797...94201896 bi-directional rn6
hsa-clu-347 6:107065899...107070604 uni-directional hg38
mmu-clu-25 6:120890348...120892428 uni-directional mm10
rno-clu-134 6:122356429...122438743 bi-directional rn6
mmu-clu-129 6:127762580...127855745 bi-directional mm10
mmu-clu-131 6:128167684...128200463 uni-directional mm10
mmu-clu-29 6:128438890...128449818 uni-directional mm10
hsa-clu-248 6:158609376...158627945 uni-directional hg38
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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