PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
mmu-clu-116 5:113320060...113375795 bi-directional mm10
mmu-clu-117 5:114812951...114854969 uni-directional mm10
mmu-clu-120 5:115124536...115144453 uni-directional mm10
mmu-clu-19 5:130151670...130155080 uni-directional mm10
mmu-clu-20 5:135160228...135163875 uni-directional mm10
mmu-clu-21 5:136933868...136936638 uni-directional mm10
rno-clu-131 5:141510813...141517990 uni-directional rn6
rno-clu-132 5:141546917...141551039 uni-directional rn6
mmu-clu-22 5:143758370...143773096 uni-directional mm10
mmu-clu-121 5:149782317...149830147 uni-directional mm10
rno-clu-31 5:153976546...153979809 uni-directional rn6
hsa-clu-338 5:180676040...180683924 uni-directional hg38
hsa-clu-242 5:180684311...180693005 uni-directional hg38
hsa-clu-243 6:4360241...4378844 uni-directional hg38
hsa-clu-339 6:18366706...18368113 uni-directional hg38
hsa-clu-340 6:25726509...25732174 uni-directional hg38
hsa-clu-341 6:26107677...26124351 uni-directional hg38
hsa-clu-342 6:26234521...26234948 uni-directional hg38
rno-clu-32 6:27916733...27918620 uni-directional rn6
hsa-clu-244 6:29529975...29533498 uni-directional hg38
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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