PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
mmu-clu-113 4:149176743...149178695 uni-directional mm10
rno-clu-22 4:153438123...153441125 uni-directional rn6
hsa-clu-337 4:154740242...154742682 uni-directional hg38
rno-clu-122 4:160341300...160417256 bi-directional rn6
rno-clu-25 4:160838806...160840485 uni-directional rn6
rno-clu-26 4:160965937...160967250 uni-directional rn6
rno-clu-27 4:160993882...160996868 uni-directional rn6
rno-clu-28 4:161757663...161776001 uni-directional rn6
hsa-clu-240 5:1345981...1349783 uni-directional hg38
hsa-clu-241 5:14693638...14710973 uni-directional hg38
rno-clu-123 5:24771284...24801835 uni-directional rn6
rno-clu-29 5:24975749...24991176 uni-directional rn6
mmu-clu-114 5:25690390...25704621 uni-directional mm10
rno-clu-125 5:62129909...62141245 uni-directional rn6
rno-clu-126 5:74432491...74443282 uni-directional rn6
rno-clu-127 5:77988856...77990457 uni-directional rn6
rno-clu-128 5:78071437...78071572 uni-directional rn6
rno-clu-30 5:78073596...78082458 uni-directional rn6
mmu-clu-115 5:101833306...101851443 uni-directional mm10
rno-clu-129 5:113209917...113260416 uni-directional rn6
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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