PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
dme-clu-22 3R:15244636...15263693 uni-directional dm6
dme-clu-76 3R:31595209...31603527 uni-directional dm6
dme-clu-31 4:134470...142548 uni-directional dm6
dme-clu-32 4:803594...819286 uni-directional dm6
dme-clu-33 4:991735...1003049 uni-directional dm6
dme-clu-86 4:1254747...1281062 bi-directional dm6
hsa-clu-237 4:10117426...10154756 uni-directional hg38
mmu-clu-14 4:56806484...56809282 uni-directional mm10
mmu-clu-106 4:57357133...57364274 uni-directional mm10
mmu-clu-107 4:59770501...59772441 uni-directional mm10
mmu-clu-108 4:62220564...62239162 bi-directional mm10
mmu-clu-109 4:94277279...94331620 uni-directional mm10
rno-clu-117 4:112635817...112647791 uni-directional rn6
rno-clu-118 4:116827665...116838964 uni-directional rn6
rno-clu-119 4:116879729...116891640 uni-directional rn6
hsa-clu-239 4:118631040...118633152 uni-directional hg38
rno-clu-120 4:119868390...119902751 uni-directional rn6
mmu-clu-111 4:123833890...123841817 uni-directional mm10
mmu-clu-112 4:123891030...123896404 uni-directional mm10
mmu-clu-16 4:135626719...135630117 uni-directional mm10
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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