PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
hsa-clu-236 3:182003493...182009794 uni-directional hg38
dme-clu-23 3L:8727444...8730315 uni-directional dm6
dme-clu-77 3L:9475674...9495369 uni-directional dm6
dme-clu-78 3L:19684049...19684511 uni-directional dm6
dme-clu-24 3L:19861940...19881198 uni-directional dm6
dme-clu-79 3L:23281428...23317944 bi-directional dm6
dme-clu-26 3L:23460609...23480586 bi-directional dm6
dme-clu-82 3L:24115202...24128635 uni-directional dm6
dme-clu-83 3L:24320400...24334584 uni-directional dm6
dme-clu-84 3L:24560788...24578730 uni-directional dm6
dme-clu-27 3L:24768431...24786692 uni-directional dm6
dme-clu-28 3L:24901016...24917969 uni-directional dm6
dme-clu-29 3L:25048187...25051615 uni-directional dm6
dme-clu-30 3L:25401638...25419903 uni-directional dm6
dme-clu-85 3L:27966934...27975891 uni-directional dm6
dme-clu-17 3R:3379568...3398184 uni-directional dm6
dme-clu-72 3R:3762024...3774774 uni-directional dm6
dme-clu-73 3R:3877116...3923806 bi-directional dm6
dme-clu-75 3R:4176067...4200501 bi-directional dm6
dme-clu-21 3R:11210564...11224243 uni-directional dm6
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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