PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
hsa-clu-230 3:12893230...12899808 uni-directional hg38
hsa-clu-231 3:15024148...15052398 bi-directional hg38
mmu-clu-103 3:20455371...20489099 uni-directional mm10
rno-clu-111 3:21819338...21822743 uni-directional rn6
mmu-clu-13 3:34867867...34878576 uni-directional mm10
hsa-clu-233 3:38524377...38538370 uni-directional hg38
hsa-clu-234 3:44568381...44580907 uni-directional hg38
rno-clu-112 3:81432310...81505102 bi-directional rn6
rno-clu-113 3:82069488...82081047 uni-directional rn6
rno-clu-17 3:120255760...120272530 uni-directional rn6
mmu-clu-105 3:124400529...124421456 uni-directional mm10
hsa-clu-335 3:128828115...128861847 bi-directional hg38
hsa-clu-336 3:133824507...133830124 uni-directional hg38
rno-clu-18 3:145487801...145497042 uni-directional rn6
rno-clu-19 3:145596470...145614248 uni-directional rn6
rno-clu-114 3:145906398...145916788 uni-directional rn6
rno-clu-115 3:146179610...146203392 uni-directional rn6
rno-clu-116 3:146854160...146862169 uni-directional rn6
rno-clu-20 3:146894816...146895892 uni-directional rn6
rno-clu-21 3:146929112...146945819 uni-directional rn6
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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