PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
hsa-clu-431 21:44467727...44498603 bi-directional hg38
hsa-clu-319 22:19016498...19019437 uni-directional hg38
hsa-clu-432 22:23891580...23916146 uni-directional hg38
hsa-clu-434 22:37337052...37383087 bi-directional hg38
hsa-clu-321 22:41808885...41828753 uni-directional hg38
dme-clu-10 2L:5103...11157 uni-directional dm6
dme-clu-65 2L:13411202...13411597 uni-directional dm6
dme-clu-11 2L:20105439...20114272 uni-directional dm6
dme-clu-66 2L:20129685...20175722 bi-directional dm6
dme-clu-14 2L:20198142...20232528 bi-directional dm6
dme-clu-70 2L:22389653...22405384 uni-directional dm6
dme-clu-71 2L:23071371...23089464 uni-directional dm6
dme-clu-16 2L:23229658...23241540 uni-directional dm6
dme-clu-55 2R:4853065...4880481 uni-directional dm6
dme-clu-57 2R:6256844...6329934 bi-directional dm6
dme-clu-5 2R:6389576...6392120 uni-directional dm6
dme-clu-61 2R:6416892...6486082 bi-directional dm6
dme-clu-9 2R:11893879...11895486 uni-directional dm6
hsa-clu-228 3:10248846...10279304 uni-directional hg38
hsa-clu-332 3:12850474...12875968 uni-directional hg38
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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