PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
mmu-clu-11 2:151141496...151157441 uni-directional mm10
mmu-clu-101 2:151248754...151262185 uni-directional mm10
mmu-clu-12 2:151321183...151331527 uni-directional mm10
mmu-clu-102 2:151402908...151416848 uni-directional mm10
rno-clu-109 2:228642007...228665289 uni-directional rn6
hsa-clu-331 2:238220721...238231363 uni-directional hg38
hsa-clu-226 2:238445472...238458216 uni-directional hg38
hsa-clu-227 2:238538704...238550336 uni-directional hg38
hsa-clu-428 20:5483996...5501733 uni-directional hg38
rno-clu-186 20:6526189...6527102 uni-directional rn6
rno-clu-187 20:6599550...6698425 bi-directional rn6
rno-clu-189 20:13726210...13759541 uni-directional rn6
rno-clu-191 20:18459762...18467828 uni-directional rn6
rno-clu-80 20:23333081...23336167 uni-directional rn6
rno-clu-81 20:28646772...28657960 uni-directional rn6
rno-clu-82 20:32269812...32316115 uni-directional rn6
rno-clu-84 20:33872384...33873608 uni-directional rn6
hsa-clu-429 20:41179555...41185137 uni-directional hg38
hsa-clu-430 20:48535632...48552907 uni-directional hg38
hsa-clu-317 20:63928375...63943464 uni-directional hg38
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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