PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-452 JH001907.1:119591...121576 uni-directional crigri1
cgr-clu-213 JH001963.1:178112...180316 uni-directional crigri1
cgr-clu-214 JH001964.1:99335...103071 uni-directional crigri1
cgr-clu-215 JH002004.1:103230...106769 uni-directional crigri1
cgr-clu-453 JH002016.1:158587...160188 uni-directional crigri1
cgr-clu-454 JH002095.1:171768...173070 uni-directional crigri1
cgr-clu-216 JH002103.1:100351...107233 bi-directional crigri1
cgr-clu-217 JH002147.1:51274...54550 uni-directional crigri1
cgr-clu-456 JH002285.1:41204...45790 uni-directional crigri1
cgr-clu-218 JH002335.1:104614...107768 uni-directional crigri1
cgr-clu-457 JH002341.1:11210...16127 uni-directional crigri1
cgr-clu-458 JH002445.1:140688...147103 uni-directional crigri1
cgr-clu-219 JH002464.1:119819...120889 uni-directional crigri1
cgr-clu-220 JH002628.1:59399...70792 bi-directional crigri1
cgr-clu-460 JH002781.1:58913...62074 uni-directional crigri1
cgr-clu-221 JH002784.1:63938...66172 uni-directional crigri1
cgr-clu-222 JH002929.1:72114...85443 bi-directional crigri1
cgr-clu-223 JH003075.1:96799...101190 uni-directional crigri1
cgr-clu-224 JH004030.1:7618...12190 uni-directional crigri1
cgr-clu-225 JH004680.1:10281...11884 uni-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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