PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
cgr-clu-200 JH001418.1:244909...251154 uni-directional crigri1
cgr-clu-440 JH001436.1:62813...68608 uni-directional crigri1
cgr-clu-441 JH001443.1:7011...11414 bi-directional crigri1
cgr-clu-202 JH001484.1:254856...256406 uni-directional crigri1
cgr-clu-203 JH001520.1:22995...24379 uni-directional crigri1
cgr-clu-204 JH001532.1:249444...253059 bi-directional crigri1
cgr-clu-443 JH001553.1:12929...14822 uni-directional crigri1
cgr-clu-205 JH001569.1:66550...85978 uni-directional crigri1
cgr-clu-206 JH001574.1:325404...334586 uni-directional crigri1
cgr-clu-444 JH001575.1:202417...204066 bi-directional crigri1
cgr-clu-208 JH001575.1:245311...250030 uni-directional crigri1
cgr-clu-209 JH001585.1:110772...116422 uni-directional crigri1
cgr-clu-445 JH001631.1:278911...289257 uni-directional crigri1
cgr-clu-446 JH001681.1:187483...190084 uni-directional crigri1
cgr-clu-447 JH001693.1:175288...189569 uni-directional crigri1
cgr-clu-448 JH001770.1:164021...170647 bi-directional crigri1
cgr-clu-449 JH001812.1:150451...152397 uni-directional crigri1
cgr-clu-211 JH001818.1:216222...220731 uni-directional crigri1
cgr-clu-450 JH001823.1:109480...111138 uni-directional crigri1
cgr-clu-212 JH001903.1:114349...123858 bi-directional crigri1
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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