PIWI-interacting RNA (piRNA) Database - piRNAdb

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925 Results

Here is provided the full list of all piRNA clusters stored on piRNAdb. We use the methodology of sliding window with all piRNAs that had unique aligments to the specific genome. We like to clarify that we are on a update proccess to use a better and new methodology that uses sliding windows, but also uses information about the amount of expression of each piRNAs to produce this cluster list.
Accessing any item, you will be redirected to the choosen cluster information, including ordinary statisthics, authors, amount of piRNA associated. It is also provided a list with as piRNAs associated to the cluster and their links.
You are able to choose how many itens do you want to display in each page on the selection box of "Filter" section. In the same section, you could choose to display only itens from one specific organism of interest.
To get more information about the identification criteria, methodology and parameters that we used, access the specific page "About", item: Cluster Criteria.

On the page "Downloads" we provide a text file with all cluster information.

Display More Information...

Code Localization Direction Build Code
dme-clu-35 X:123147...140014 uni-directional dm6
dme-clu-87 X:1482188...1482701 uni-directional dm6
dme-clu-36 X:5900908...5911712 uni-directional dm6
dme-clu-37 X:8473028...8483252 uni-directional dm6
dme-clu-38 X:11197719...11199409 uni-directional dm6
dme-clu-39 X:21521590...21532111 uni-directional dm6
dme-clu-40 X:21552928...21560904 uni-directional dm6
dme-clu-41 X:21632400...21672356 uni-directional dm6
dme-clu-44 X:21723646...21748483 uni-directional dm6
dme-clu-46 X:21781873...21794467 uni-directional dm6
dme-clu-47 X:21918372...21930479 uni-directional dm6
dme-clu-48 X:22254796...22259652 uni-directional dm6
dme-clu-49 X:22354512...22403469 bi-directional dm6
dme-clu-51 X:23195438...23228588 uni-directional dm6
dme-clu-90 X:23270919...23282544 uni-directional dm6
dme-clu-53 X:23416103...23433367 uni-directional dm6
dme-clu-91 X:23472415...23473428 uni-directional dm6
hsa-clu-322 X:53142960...53161554 uni-directional hg38
mmu-clu-205 X:66776761...66810494 uni-directional mm10
rno-clu-85 X:73080950...73088770 uni-directional rn6
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piRNA Database version 1.8.0

MOC - Molecular Oncology Center

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