PIWI-interacting RNA (piRNA) Database - piRNAdb
piRNA: rno-piR-18397
- Accession:
- rno-piR-18397
- Organism Name:
- Rattus norvegicus
- Sequence Length:
- 29
- Alignments to rn6:
- 1
- Community Agree / Disagree:
- 0 / 0
- Community Comments:
- 0
- Datasets Found:
- 2
- Papers Describing:
- 2
rno-piR-18397 Sequence
Based on genomic context
rno-piR-18397 Aliases
In this section we provide all access alias for this piRNA in other databases. It is usual that databases store the same sequences of RNAs, but using different accession codes and identification. The association of a piRNA on our database and on another database is made by the comparison of the base sequence. Now, we have alias for piRNAs stored on the following databases: NCBI, ENA, piRNABank, piRBase, piRNAQuest and RNAdb.
rno-piR-18397 Tissue Expression
Box plot visualization related to the piRNA expression found in datasets processed by the development team of piRNAdb. Categories and tissues may vary depending to the organism selected and availability to download the sample data. More information related to the methodology and softwares, access the specific page "About": Tissue Expression.
Raw counts and normalized by TMM are available.
None rno-piR-18397 Genomic Feature(s) Found to Draw the Cloud!
None rno-piR-18397 Target Site(s) Found to Draw the Cloud!
None rno-piR-18397 Target Gene Ontology Terms Found!
rno-piR-18397 Feedback
Do you believe this is a real piRNA?
More important than just use the information provided, here the piRNA enthuast user and the researcher are able to provide their opinion about this specific piRNA. Is provided a form to write your comments and a simplified pool. This feature was developed to increase the connection and integration of different or equal opinions about this specific piRNA.
- Newest
rno-piR-18397 Dataset
In this section we provide information related to the dataset where this piRNA was found. If there is more than on item available, it means that this piRNA was found in more than one project. It is important to cite and give credits to all the authors that have found this RNA sequence.
| Reference | Methods | Tissue |
|---|---|---|
| 16751776 | Immunoprecipitation | testis |
| 16778019 | small RNA-seq | testis |
rno-piR-18397 Reference
Provide information related to the published papers that use this piRNA. It is different to the "Dataset" section above because any paper that uses this piRNA, like evaluating the expression, mutation or variation, may be displayed here.
|
|