PIWI-interacting RNA (piRNA) Database - piRNAdb

You are trying to access: hsa_piRNA_4255
This access code belongs to another piRNA database. On piRNAdb we use the following access code: hsa-piR-20792

This feature of piRNAdb have the major objective to make easier to access the piRNA information. It provides the automatic translation of different piRNA alias from other databases to the code that we use on piRNAdb and provide the redirection to the piRNA information page.

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piRNA: hsa-piR-20792

Accession:
hsa-piR-20792
Organism Name:
Homo sapiens
Sequence Length:
29
Alignments to hg38:
92879
Community Agree / Disagree:
0 / 0
Community Comments:
0
Datasets Found:
1
Papers Describing:
1

hsa-piR-20792 Sequence
Based on genomic context

TGTAATCCCAGCACTTTGGGAGGCCGAGG

hsa-piR-20792 Aliases

In this section we provide all access alias for this piRNA in other databases. It is usual that databases store the same sequences of RNAs, but using different accession codes and identification. The association of a piRNA on our database and on another database is made by the comparison of the base sequence. Now, we have alias for piRNAs stored on the following databases: NCBI, ENA, piRNABank, piRBase, piRNAQuest and RNAdb.

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DQ590704.1 hsa_piRNA_4255 hsa_piR_015150 piR-57816 piR-hsa-21000 URS00003BC008

hsa-piR-20792 Tissue Expression

Box plot visualization related to the piRNA expression found in datasets processed by the development team of piRNAdb. Categories and tissues may vary depending to the organism selected and availability to download the sample data. More information related to the methodology and softwares, access the specific page "About": Tissue Expression.
Raw counts and normalized by TMM are available.

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hsa-piR-20792 Genomic Feature(s) Overlap Cloud

This feature allow the user and researcher to visualize the genes associated to this piRNA in a objective way, it displays the genes based on the amount of alignments overlapping the gene coordinates.
Genes with a bigger font size and more vivid orange color have a higher amount of overlapping alignments, and a smaller font size and grey tone color is associated with a few amount of overlapping alignments.

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hsa-piR-20792 Target Site(s) Cloud

This feature allow the user and researcher to visualize the predited targets by this piRNA in a objective way, it displays the genes based on the amount of complementary sites to the piRNA sequence following specific and updated rules.
To get more information about rules, cut-off and data source, access the specific page "FAQ/Help", item: piRNA Target Selection Criteria Genes with a bigger font size and more vivid orange color have a higher amount of overlapping alignments, and a smaller font size and grey tone color is associated with a few amount of overlapping alignments.

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hsa-piR-20792 Target Gene Ontology Terms

We develop this feature to associate gene ontology terms found in databases and literature to predicted target genes to this piRNA. It contain information about the gene ontology term title and amount of genes that is related to one determined term.
Place the cursor over the term if it appear truncated.

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hsa-piR-20792 Feedback

Do you believe this is a real piRNA?
More important than just use the information provided, here the piRNA enthuast user and the researcher are able to provide their opinion about this specific piRNA. Is provided a form to write your comments and a simplified pool. This feature was developed to increase the connection and integration of different or equal opinions about this specific piRNA.

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Yes

hsa-piR-20792 Dataset

In this section we provide information related to the dataset where this piRNA was found. If there is more than on item available, it means that this piRNA was found in more than one project. It is important to cite and give credits to all the authors that have found this RNA sequence.

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Reference	Methods	Tissue
16751776	Immunoprecipitation	testis

hsa-piR-20792 Reference

Provide information related to the published papers that use this piRNA. It is different to the "Dataset" section above because any paper that uses this piRNA, like evaluating the expression, mutation or variation, may be displayed here.

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Title A germline-specific class of small RNAs binds mammalian Piwi proteins. Journal Nature - 2006 Author Girard A; Sachidanandam R; Hannon GJ; Carmell MA Pubmed 16751776

piRNA: hsa-piR-20792

hsa-piR-20792 Sequence Based on genomic context

hsa-piR-20792 Aliases

hsa-piR-20792 Tissue Expression

hsa-piR-20792 Genomic Feature(s) Overlap Cloud

hsa-piR-20792 Target Site(s) Cloud

hsa-piR-20792 Target Gene Ontology Terms

hsa-piR-20792 Feedback

hsa-piR-20792 Dataset

hsa-piR-20792 Reference

hsa-piR-20792 Sequence
Based on genomic context